PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_ED5844DD2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 828aa    MW: 94231.7 Da    PI: 6.9094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_ED5844DD2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.51.2e-19216300191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                            ++Yn+YA ++GF v++ +++k+       + ++ C+++ k +  ++   +++r++++ ++t+C+ak+ vk+  +g+w+++ +++eHnH
  Traes_6DL_ED5844DD2.1 216 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKIIVKLI-KGEWVIAAVQNEHNH 296
                            69*******************9......4677******9988755543799999******************.9************** PP

                   FAR1  88 elap 91 
                            +l+p
  Traes_6DL_ED5844DD2.1 297 PLSP 300
                            *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-18216300IPR004330FAR1 DNA binding domain
PfamPF105511.8E-29422512IPR018289MULE transposase domain
PROSITE profilePS509669.013703740IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
ASALPARAAG GHAQQVPAAA AAPPTSSRVV AKSNNSSAKT PGSSSNKRVI YIVAGDDGSH  60
VPILRKVQVY GEEGSKGYEK TPAPACNVVK QARLDAGKQP VRRPRIQLLS NNREERSAEL  120
MDDNAEAAIA LQVKLERSAS YVDRSLQLQT TEEHDVMEID DISSDDTGSE SDSDSSSGSE  180
SEKEEGRFFY PAPEALGTVK APQVGMKFPT LEDAHEYYNT YALQTGFVVV RGRNYKRQRF  240
QLDCNRNRKV KLVEDLNLKR KRKKNVIEKT NCQAKIIVKL IKGEWVIAAV QNEHNHPLSP  300
SRSFTRFLTS QKHMSPEERS FSRVLQQSRV PPGEILKILR RMSAFFRELP SKEKQALILQ  360
SAEQWRKANL DVEKTLNHFE ELQLQDPCFF YTVQKDEDSM LRSIFWTDAR SRMDYEIFGD  420
FVSFDTTFST NRHNMPFVPI TGMNNRGRTI VLGCALLQDR KAETYKWMLQ TFLQEMGGGQ  480
MPKSVITSQD EAMSKAIAEV MPQARHRFCR WNGKAQEKMA AFVAARGNMK AELDILVDNS  540
LTETEFEQGW SALIQRHDAS ENEYLQLLWE MRKTWAPVYF MQDFFPFVVS ARGSQGAFSL  600
FKENVLPKDK IENLIEKYEE MQDKIKKTDE EDALEAATEP SCFSLQPIER HASRVYTRQI  660
FLKVQKELLH STAFKVQEIE RGALYRLDKA SNYENPEYDR DSFEVSVESG VTDTYTCQCA  720
KFARDGILCC HVFRLFTQFG IDEIPEKYIV ARWTDGFREE QLERREEGRL VAAARREEDA  780
ARYAALMSKA AGIGREICGD GAKCDAFMLE LDRIREKMAT MVMANDHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257264LKRKRKKN
2259263RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755491.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5H0N70.0W5H0N7_WHEAT; Uncharacterized protein
STRINGMLOC_44423.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-74FAR1-related sequence 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]